Peng Qiu, MD
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Research Program
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Phone Number
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Email Address
Biography
Peng Qiu, PhD, is an associate professor in the Wallace H. Coulter Department of Biomedical Engineering at Georgia Tech School of Engineering and Emory University School of Medicine.
Dr. Qiu is a member of the Discovery and Developmental Therapeutics Research Program at Winship Cancer Institute.
Education
Dr. Qiu received his PhD in Electrical and Computer Engineering from University of Maryland in College Park, Maryland.
Titles & Roles
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Associate Professor, Wallace H. Coulter Department of Biomedical EngineeringGeorgia Institute of Technology and Emory University
Research
Dr. Qiu's research interests are in the areas of bioinformatics and computational biology with a focus on statistical signal processing, machine learning, control systems and optimization.
As it relates to cancer, he is interested in single-cell analysis, and multi-omics pan-cancer data integration. He is collaborating with Winship investigator Adam Marcus, PhD, on the analysis of single-cell RNAseq data of leader/follower cells in experiments that study the behavior of collective invasion in cancer.
Grants
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Grant Number Title 1U01CA265711-01 AND-gated Synthetic Biomarkers for Early Detection of Liver Metastasis 5U01CA265711-02 AND-gated Synthetic Biomarkers for Early Detection of Liver Metastasis 5U01CA265711-03 AND-gated Synthetic Biomarkers for Early Detection of Liver Metastasis Title/Journal Authors Publication Date Quantifying the clusterness and trajectoriness of single-cell RNA-seq data.
PLoS computational biology
HS Lim, P Qiu 01/02/2024 Nature communications
Z Zhang, X Zhao, M Bindra, P Qiu, X Zhang 30/01/2024 Stromal STAT5-Mediated Trophic Activity Regulates Hematopoietic Niche Factors.
Stem cells (Dayton, Ohio)
Z Wang, G Emmel, HS Lim, W Zhu, A Kosters, EEB Ghosn, P Qiu, KD Bunting 08/10/2023 The journal of physical chemistry. B
R Poorna, WW Chen, A Germond, P Qiu, MT Cicerone 24/08/2023 Communications biology
LA Hymel, SE Anderson, TC Turner, WY York, H Zhang, AR Liversage, HS Lim, P Qiu, LJ Mortensen, YC Jang, NJ Willett, EA Botchwey 19/07/2023 Journal of computational biology : a journal of computational molecular cell biology
HS Lim, P Qiu 01/07/2023 Toward Gene-Correlated Spatially Resolved Metabolomics with Fingerprint Coherent Raman Imaging.
The journal of physical chemistry. B
R Poorna, WW Chen, P Qiu, MT Cicerone 29/06/2023 bioRxiv : the preprint server for biology
Z Zhang, X Zhao, P Qiu, X Zhang 02/05/2023 iScience
KM Young, C Xu, K Ahkee, R Mezencev, SP Swingle, T Yu, A Paikeday, C Kim, JF McDonald, P Qiu, T Sulchek 21/04/2023 Domain adaptation for supervised integration of scRNA-seq data.
Communications biology
Y Sun, P Qiu 16/03/2023 Inflammatory bowel diseases
SC Maddipatla, VL Kolachala, S Venkateswaran, AF Dodd, RS Pelia, D Geem, H Yin, Y Sun, C Xu, A Mo, A Kosters, J Yang, JD Matthews, E Ghosn, S Kugathasan, P Qiu 01/02/2023 Embracing enzyme promiscuity with activity-based compressed biosensing.
Cell reports methods
BA Holt, HS Lim, A Sivakumar, H Phuengkham, M Su, M Tuttle, Y Xu, H Liakakos, P Qiu, GA Kwong 23/01/2023 Gene representation in scRNA-seq is correlated with common motifs at the 3' end of transcripts.
Frontiers in bioinformatics
X Li, G Gibson, P Qiu 01/01/2023 BMC genomics
S Lin, S Yi, P Qiu 18/11/2022 Journal of cystic fibrosis : official journal of the European Cystic Fibrosis Society
C Margaroli, H Horati, LW Garratt, VD Giacalone, C Schofield, AS Dittrich, T Rosenow, BS Dobosh, HS Lim, DL Frey, M Veltman, GL Silva, MR Brown, C Schultz, HAWM Tiddens, S Ranganathan, JD Chandler, P Qiu, L Peng, BJ Scholte, MA Mall, A Kicic, L Guglani, SM Stick, HM Janssens, R Tirouvanziam 01/11/2022 iScience
C Xu, J Yang, A Kosters, BR Babcock, P Qiu, EEB Ghosn 21/10/2022 Integrative analysis of TCGA data identifies miRNAs as drug-specific survival biomarkers.
Scientific reports
S Lin, J Zhou, Y Xiao, B Neary, Y Teng, P Qiu 26/04/2022 Nature biomedical engineering
QD Mac, A Sivakumar, H Phuengkham, C Xu, JR Bowen, FY Su, SZ Stentz, H Sim, AM Harris, TT Li, P Qiu, GA Kwong 01/03/2022 Science advances
MA Fernandez-Yague, LA Hymel, CE Olingy, C McClain, ME Ogle, JR García, D Minshew, S Vyshnya, HS Lim, P Qiu, AJ García, EA Botchwey 25/02/2022 Methylation of CpG Sites as Biomarkers Predictive of Drug-Specific Patient Survival in Cancer.
Cancer informatics
B Neary, S Lin, P Qiu 01/01/2022 Journal of experimental & clinical cancer research : CR
L Lang, F Wang, Z Ding, X Zhao, R Loveless, J Xie, C Shay, P Qiu, Y Ke, NF Saba, Y Teng 14/12/2021 Journal of biomedical materials research. Part A
LA Hymel, ME Ogle, SE Anderson, CL San Emeterio, TC Turner, WY York, AY Liu, CE Olingy, S Sridhar, HS Lim, T Sulchek, P Qiu, YC Jang, NJ Willett, EA Botchwey 01/05/2021 Correction to: Aging progression of human gut microbiota.
BMC microbiology
C Xu, H Zhu, P Qiu 28/04/2021 Identifying gene expression patterns associated with drug-specific survival in cancer patients.
Scientific reports
B Neary, J Zhou, P Qiu 02/03/2021 PLoS computational biology
HS Lim, P Qiu 01/03/2021 Biomaterials
MCP Sok, N Baker, C McClain, HS Lim, T Turner, L Hymel, M Ogle, C Olingy, JI Palacios, JR Garcia, K Srithar, AJ García, P Qiu, EA Botchwey 01/01/2021 Frontiers in bioengineering and biotechnology
CL San Emeterio, LA Hymel, TC Turner, ME Ogle, EG Pendleton, WY York, CE Olingy, AY Liu, HS Lim, TA Sulchek, GL Warren, LJ Mortensen, P Qiu, YC Jang, NJ Willett, EA Botchwey 01/01/2021 Life science alliance
J Tanevski, T Nguyen, B Truong, N Karaiskos, ME Ahsen, X Zhang, C Shu, K Xu, X Liang, Y Hu, HV Pham, L Xiaomei, TD Le, AL Tarca, G Bhatti, R Romero, N Karathanasis, P Loher, Y Chen, Z Ouyang, D Mao, Y Zhang, M Zand, J Ruan, C Hafemeister, P Qiu, D Tran, T Nguyen, A Gabor, T Yu, J Guinney, E Glaab, R Krause, P Banda, G Stolovitzky, N Rajewsky, J Saez-Rodriguez, P Meyer 01/11/2020 Leveraging TCGA gene expression data to build predictive models for cancer drug response.
BMC bioinformatics
EA Clayton, TA Pujol, JF McDonald, P Qiu 30/09/2020 GLaMST: grow lineages along minimum spanning tree for b cell receptor sequencing data.
BMC genomics
X Yang, CM Tipton, MC Woodruff, E Zhou, FE Lee, I Sanz, P Qiu 09/09/2020 PLoS computational biology
W Pilcher, X Yang, A Zhurikhina, O Chernaya, Y Xu, P Qiu, D Tsygankov 01/09/2020 Risk-associated alterations in marrow T cells in pediatric leukemia.
JCI insight
JK Bailur, SS McCachren, K Pendleton, JC Vasquez, HS Lim, A Duffy, DB Doxie, A Kaushal, C Foster, D DeRyckere, S Castellino, ML Kemp, P Qiu, MV Dhodapkar, KM Dhodapkar 20/08/2020 Immunotherapy via PD-L1-presenting biomaterials leads to long-term islet graft survival.
Science advances
MM Coronel, KE Martin, MD Hunckler, G Barber, EB O'Neill, JD Medina, E Opri, CA McClain, L Batra, JD Weaver, HS Lim, P Qiu, EA Botchwey, ES Yolcu, H Shirwan, AJ García 01/08/2020 Embracing the dropouts in single-cell RNA-seq analysis.
Nature communications
P Qiu 03/03/2020 Classification of Antibacterial Peptides Using Long Short-Term Memory Recurrent Neural Networks.
IEEE/ACM transactions on computational biology and bioinformatics
M Youmans, JCG Spainhour, P Qiu 01/01/2020 Quantitative Proteome Landscape of the NCI-60 Cancer Cell Lines.
iScience
T Guo, A Luna, VN Rajapakse, CC Koh, Z Wu, W Liu, Y Sun, H Gao, MP Menden, C Xu, L Calzone, L Martignetti, C Auwerx, M Buljan, A Banaei-Esfahani, A Ori, M Iskar, L Gillet, R Bi, J Zhang, H Zhang, C Yu, Q Zhong, S Varma, U Schmitt, P Qiu, Q Zhang, Y Zhu, PJ Wild, MJ Garnett, P Bork, M Beck, K Liu, J Saez-Rodriguez, F Elloumi, WC Reinhold, C Sander, Y Pommier, R Aebersold 22/11/2019 Aging progression of human gut microbiota.
BMC microbiology
C Xu, H Zhu, P Qiu 28/10/2019 Deconvolving multiplexed protease signatures with substrate reduction and activity clustering.
PLoS computational biology
Q Zhuang, BA Holt, GA Kwong, P Qiu 01/09/2019 Targeting nuclear β-catenin as therapy for post-myeloproliferative neoplasm secondary AML.
Leukemia
DT Saenz, W Fiskus, T Manshouri, CP Mill, Y Qian, K Raina, K Rajapakshe, C Coarfa, R Soldi, P Bose, G Borthakur, TM Kadia, JD Khoury, L Masarova, AJ Nowak, B Sun, DN Saenz, SM Kornblau, S Horrigan, S Sharma, P Qiu, CM Crews, S Verstovsek, KN Bhalla 01/06/2019 Arthritis & rheumatology (Hoboken, N.J.)
A Mahendra, X Yang, S Abnouf, JRT Adolacion, D Park, S Soomro, J Roszik, C Coarfa, G Romain, K Wanzeck, SL Bridges, A Aggarwal, P Qiu, SK Agarwal, C Mohan, N Varadarajan 01/04/2019 ACS applied materials & interfaces
W Hong, Y Zhao, Y Guo, C Huang, P Qiu, J Zhu, C Chu, H Shi, M Liu 20/02/2019 Correlation Patterns Between DNA Methylation and Gene Expression in The Cancer Genome Atlas.
Cancer informatics
JC Spainhour, HS Lim, SV Yi, P Qiu 01/01/2019